Misc NIAID SGC Data
Data Type: misc_niaid_sgc
Primary Key: target_id
Attributes
-
_version_
(number)
-
date_inserted
(date)
- ISO-8601 UTC datetime when the NIAID SGC target row was first loaded into BV-BRC; lets ETL pipelines pull only new entries. "2023-05-17T12:45:31Z"
-
date_modified
(date)
- Updated whenever any field in the row changes; clients use it to refresh only changed records. "2025-04-06T09:18:55Z"
-
gene_symbol_collection
(array of strings)
- One or more HGNC/NCBI gene symbols belonging to the same structural-genomics “target” (e.g. orthologues or paralogues selected for cloning/structural work). [ "recA", "RAD51" ]
-
genus
(string)
- Latin genus of the organism from which the structural-genomics target originates; helps users filter by taxonomic breadth. "Mycobacterium"
-
has_clones
(string)
- yes, no, partial — indicates whether expression clones have been generated and are available through the NIAID Structural Genomics Center (SGC) repository. "yes"
-
has_proteins
(string)
- yes, no, in_progress — shows whether soluble protein has been produced for downstream assays or crystallography. "in_progress"
-
selection_criteria
(string)
- Short phrase explaining why the gene/family was chosen (e.g. “essential gene”, “novel drug target”, “immune evasion factor”). "essential gene"
-
species
(string)
- Scientific binomial of the organism providing the gene/protein for the SGC pipeline. "Mycobacterium tuberculosis"
-
strain
(string)
- Specific strain used for cloning (important when gene sequence varies between strains). "H37Rv"
-
target_id
*
(string)
- Stable identifier assigned by the NIAID SGC to each structural-genomics target; used as join key to link clones, expression data and structures. "SGC_MTUB_000123"
-
target_status
(string)
- Current stage in the structural-genomics pipeline — values like selected, cloned, expressed, purified, crystallized, structure_determined. Guides users to what materials are available. "purified"
API
GET :target_id
Retrieve a misc_niaid_sgc data object by target_id
EXAMPLE
https://www.bv-brc.org/api/misc_niaid_sgc/AcbaA.00587.b
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QUERY :query
Query for misc_niaid_sgc data objects with an RQL Query
Return Formats
Requests may include an HTTP ACCEPT header from this list to transform the data into the requested type.
-
application/json - Returns results as an array of JSON objects
-
application/solr+json - Results results in SOLR JSON response format
-
text/csv - Returns results in Comma Separated values (CSV) format. Columns are separated by ','. Multi-value columns are separated by ';'. Rows are separated by new line
-
text/tsv - Returns results in Tab Separated values (TSV) format. Columns are separated by a tab. Multi-value columns are separated by ';'. Rows are separated by new line
-
application/vnd.openxmlformats - Returns objects as an MS Excel document
EXAMPLE
- Query for misc_niaid_sgc data objects with a target_id equal to AcbaA.00587.b. Return results as a JSON Array.
https://www.bv-brc.org/api/misc_niaid_sgc/?eq(target_id,AcbaA.00587.b)
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