Test Procedures =============== As part of its development, deployment, and maintenance processes, BV-BRC performs a full range of tests and validation checks to ensure correct data, analytical processing, and presentation in the resource. Below are the acceptance Test Plan and Report for the BV-BRC Beta version. As part of the Test Plan, Test Procedures define testing protocols using representative use cases, parameter settings, and exemplar data sets with expected validated results. Plans and Reports ----------------- | `Beta Test Plan <../_static/files/test_procedures/beta-test-plan-rev3.pdf>`_ | `Beta Test Report <../_static/files/test_procedures/beta-test-report-rev3.pdf>`_ Test Procedure Reports ---------------------- **Searches** | `S1 Search - Global Test Report <../_static/files/test_procedures/s1-search-global-test-report.pdf>`_ | `S2 Search - Taxa Test Report <../_static/files/test_procedures/s2-search-taxa-test-reportt.pdf>`_ | `S3 Search - Genome Test Report <../_static/files/test_procedures/s3-search-genome-test-report.pdf>`_ | `S4 Search - Strains Test Report <../_static/files/test_procedures/s4-search-strains-test-report.pdf>`_ | `S5 Search - Proteins Test Report <../_static/files/test_procedures/s5-search-proteins-test-report.pdf>`_ | `S6 Search - Specialty Genes Test Report <../_static/files/test_procedures/s6-search-specialty-genes-test-report.pdf>`_ | `S7 Search - Domains and Motifs Test Report <../_static/files/test_procedures/s6-search-domains-and-motifs-test-report.pdf>`_ | `S8 Search - Epitopes Test Report <../_static/files/test_procedures/s8-search-epitopes-test-report.pdf>`_ | `S9 Search - Protein Structures Test Report <../_static/files/test_procedures/s9-search-protein-structures-test-report.pdf>`_ | `S10 Search - Pathways Test Report <../_static/files/test_procedures/s10-search-pathways-test-report.pdf>`_ | `S11 Search - Subsystems Test Report <../_static/files/test_procedures/s11-search-subsystems-test-report.pdf>`_ | `S12 Search - Surveillance Test Report <../_static/files/test_procedures/s12-search-surveillance-test-report.pdf>`_ | `S13 Search - Serology Test Report <../_static/files/test_procedures/s13-search-serology-test-report.pdf>`_ **Data Tabs** | `D1 Overview Tab - Bacteria Test Report <../_static/files/test_procedures/d1-overview-tab-bacteria-test-report.pdf>`_ | `D2 Overview Tab - Virus Test Report <../_static/files/test_procedures/d2-overview-tab-virus-test-report.pdf>`_ | `D3 Phylogeny Tab Test Report <../_static/files/test_procedures/d3-phylogeny-tab-test-report.pdf>`_ | `D4 Taxonomy Tab Test Report <../_static/files/test_procedures/d4-taxonomy-tab-test-report.pdf>`_ | `D5 Strains Tab Test Report <../_static/files/test_procedures/d5-strains-tab-test-reportt.pdf>`_ | `D6 Genomes Tab Test Report <../_static/files/test_procedures/d6-genomes-tab-test-report.pdf>`_ | `D7 AMR Phenotypes Tab Test Report <../_static/files/test_procedures/d7-amr-phenotypes-tab-test-report>`_ | `D8 Sequences Tab Test Report <../_static/files/test_procedures/d8-sequences-tab-test-report.pdf>`_ | `D9 Proteins \(Features\) Test Report <../_static/files/test_procedures/d9-proteins-features-tab-test-report.pdf>`_ | `D10 Protein Structures Tab Test Report <../_static/files/test_procedures/d10-protein-structures-tab-test-report.pdf>`_ | `D11 Specialty Genes Tab Test Report <../_static/files/test_procedures/d11-specialty-genes-tab-test-report.pdf>`_ | `D12 Domains and Motifs Tab Test Report <../_static/files/test_procedures/d12-domains-and-motifs-tab-test-report.pdf>`_ | `D13 Epitopes Tab Test Report <../_static/files/test_procedures/d13-epitopes-tab-test-report.pdf>`_ | `D14 Surveillance Tab Test Report <../_static/files/test_procedures/d14-surveillance-tab-test-report.pdf>`_ | `D15 Serology Tab Test Report <../_static/files/test_procedures/d15-serology-tab-test-report.pdf>`_ | `D16 Experiments Tab Test Report <../_static/files/test_procedures/d16-experiments-tab-test-report.pdf>`_ | `D17 Interactions Tab Test Report <../_static/files/test_procedures/d17-interactions-tab-test-report.pdf>`_ **Analysis Tools and Services** | `A1 Service - Genome Assembly - Bacteria Test Report <../_static/files/test_procedures/a1-service-genome-assembly-bacteria-test-report.pdf>`_ | `A2 Service - Genome Annotation - Bacteria Test Report <../_static/files/test_procedures/a2-service-genome-annotation-bacteria-test-report.pdf>`_ | `A3 Service - Genome Annotation - Phage Report <../_static/files/test_procedures/a3-service-genome-annotation-phage-test-report.pdf>`_ | `A4 Service - Genome Annotation - Virus Test Report <../_static/files/test_procedures/a4-service-genome-annotation-viruses-test-report.pdf>`_ | `A5 Service - Comprehensive Genome Analysis - Bacteria Test Report <../_static/files/test_procedures/a5-service-comprehensive-genome-analysis-bacteria-test-report.pdf>`_ | `A6 Service - Homology Test Report <../_static/files/test_procedures/a6-service-homology-test-report.pdf>`_ | `A7 Service - Homology - Short Peptide Search Test Report <../_static/files/test_procedures/a7-service-homology-short-peptide-test-report.pdf>`_ | `A8 Service - Similar Genome Finder - Bacteria Test Report <../_static/files/test_procedures/a8-service-similar-genome-finder-bacteria-test-report.pdf>`_ | `A9 Service - MetaCATS Test Report <../_static/files/test_procedures/a9-service-metacats-test-report.pdf>`_ | `A10 Service - Phylogenetic Tree - Bacteria Test Report <../_static/files/test_procedures/a10-service-phylogenetic-tree-bacteria-test-report.pdf>`_ | `A11 Service - Genome Alignment - Bacteria Test Report <../_static/files/test_procedures/a11-service-genome-alignment-bacteria-test-report.pdf>`_ | `A12 Service - Primer Design Test Report <../_static/files/test_procedures/a12-service-primer-design-test-report.pdf>`_ | `A13 Service - Variation Analysis - Bacteria Test Report <../_static/files/test_procedures/a13-service-variation-analysis-bacteria-test-report.pdf>`_ | `A14 Service - Tn-Seq - Bacteria Test Report <../_static/files/test_procedures/a14-service-tn-seq-analysis-bacteria-test-report.pdf>`_ | `A15 Service - MSA and SNP Analysis Test Report <../_static/files/test_procedures/a15-service-msa-test-report.pdf>`_ | `A16 Service - Gene Tree Test Report <../_static/files/test_procedures/a16-service-gene-tree-test-report.pdf>`_ | `A17 Service - Proteome Comparison - Bacteria Test Report <../_static/files/test_procedures/a17-service-proteome-comparison-bacteria-test-report.pdf>`_ | `A18 Service - Metagenomic Read Mapping Test Report <../_static/files/test_procedures/a18-service-metagenomic-read-mapping-test-report.pdf>`_ | `A19 Service - Taxonomic Classification Test Report <../_static/files/test_procedures/a19-service-taxonomic-classification-test-report.pdf>`_ | `A20 Service - Metagenomic Binning Test Report <../_static/files/test_procedures/a20-service-metagenomic-binning-test-report.pdf>`_ | `A21 Service - Expression Import - Bacteria Test Report <../_static/files/test_procedures/a21-service-expression-import-bacteria-test-report.pdf>`_ | `A22 Service - RNA-Seq Analysis - Bacteria Test Report <../_static/files/test_procedures/a22-service-rna-seq-analysis-bacteria-test-report.pdf>`_ | `A23 Service - ID Mapper - Bacteria Test Report <../_static/files/test_procedures/a23-service-id-mapper-bacteria-test-report.pdf>`_ | `A24 Service - Fastq Utilities Test Report <../_static/files/test_procedures/a24-service-fastq-utilities-test-report.pdf>`_ **Visualizations** | `V1 Visualization - Genome Browser Test Report <../_static/files/test_procedures/v1-visualization-genome-browser-test-report.pdf>`_ | `V2 Visualization - Circular Genome Browser Test Report <../_static/files/test_procedures/v2-visualization-circular-genome-browser-test-report.pdf>`_ | `V3 Visualization - Proteome Comparison Viewer Test Report <../_static/files/test_procedures/v3-visualization-proteome-comparison-viewer-test-report.pdf>`_ | `V4 Visualization - Genome Alignment Viewer Test Report <../_static/files/test_procedures/v4-visualization-genome-alignment-viewer-test-report.pdf>`_ | `V5 Visualization - Heatmap Test Report <../_static/files/test_procedures/v5-visualization-heatmap-test-report.pdf>`_ **Workspaces** | `W1 Workspace Test Report <../_static/files/test_procedures/w1-workspace-test-report.pdf>`_