Updates and Reports

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  • Reports and Analysis

Help Resources:

  • Overview
  • Quick Start
  • Data Sources and Protocols
  • Quick Reference Guides
  • Tutorials
    • Genomics
      • Genome Assembly Service
      • Genome Annotation Service
      • Comprehensive Genome Analysis (CGA) Service
      • BLAST Service
      • Primer Design Service
      • Similar Genome Finder Service
      • Genome Alignment Service
      • Variation - SNP Analysis Service
      • Tn-Seq Analysis Service
    • Phylogenomics Services
      • Bacterial Phylogenetic Tree Service
      • Gene Tree Service
    • Protein Tools
      • MSA and SNP/Variation Analysis Service
      • Metadata-driven Comparative Analysis Tool (Meta-CATS)
      • Proteome Comparison Service
      • Comparative Systems Service
      • Small Molecule Ligand Docking Service
    • Metagenomics
      • Taxonomic Classification Service
      • Metagenomic Binning Service
      • Metagenomic Read Mapping
    • Transcriptomics
      • RNA-Seq Analysis Service
      • Expression Import Service
    • Utilities
      • Fastq Utilities Service
      • ID Mapper Tool
    • Viral Services
      • SARS-CoV-2 Genome Assembly and Annotation Service
      • SARS-Cov-2 Wastewater Analysis Service
      • Sequence Submission Service
      • HA Subtype Numbering Conversion Service
      • Subspecies Classification Service
      • Analyzing Viral Genome Assembly Using BV-BRC Tools Tutorial
    • Data Visualizations
      • Compare Region Viewer
  • Command Line Interface
  • Instructional Videos
  • Webinars
  • Workshops

System Documentation:

  • Data Management and Sharing
  • Data
  • Database
  • Capabilities And Functionality
  • Software Tools And Code
  • System Architecture
  • Documentation
  • Accounts
  • Test Procedures
  • Usage Metrics
BV-BRC
  • Tutorials
  • Edit on GitHub

Tutorials¶

The BV-BRC website provides the capability to perform a broad array of analyses. These Tutorials provide step-by-step instructions for performing common tasks and analyses using the website. The examples are chosen to also provide a relevant biological context to help deomonstrate utility and interpretation of the data and results.

Genomics¶

  • Genome Assembly Service
  • Genome Annotation Service
  • Comprehensive Genome Analysis (CGA) Service
  • BLAST Service
  • Primer Design Service
  • Similar Genome Finder Service
  • Genome Alignment Service
  • Variation - SNP Analysis Service
  • Tn-Seq Analysis Service

Phylogenomics Services¶

  • Bacterial Phylogenetic Tree Service
  • Gene Tree Service

Protein Tools¶

  • MSA and SNP/Variation Analysis Service
  • Metadata-driven Comparative Analysis Tool (Meta-CATS)
  • Proteome Comparison Service
  • Comparative Systems Service
  • Small Molecule Ligand Docking Service

Metagenomics¶

  • Taxonomic Classification Service
  • Metagenomic Binning Service
  • Metagenomic Read Mapping

Transcriptomics¶

  • RNA-Seq Analysis Service
  • Expression Import Service

Utilities¶

  • Fastq Utilities Service
  • ID Mapper Tool

Viral Services¶

  • SARS-CoV-2 Genome Assembly and Annotation Service
  • SARS-Cov-2 Wastewater Analysis Service
  • Sequence Submission Service
  • HA Subtype Numbering Conversion Service
  • Subspecies Classification Service
  • Analyzing Viral Genome Assembly Using BV-BRC Tools Tutorial

Data Visualizations¶

  • Compare Region Viewer
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