p3-get-genome-drugs

Return AMR Data For Genomes in BV-BRC

p3-get-genome-drugs [options]

This script returns the anti-microbial resistance data about the genomes identified in the standard input. It supports standard filtering parameters and the specification of additional columns if desired.

Parameters

There are no positional parameters.

The standard input can be overriddn using the options in Input Options.

Additional command-line options are those given in Data Options and Column Options plus the following.

• fields

List the fields of the table.

• resistant

Filter for drugs to which the genome is resistant.

• susceptible

Filter for drugs to which the genome is susceptible.