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Looking for Hypothetical Proteins in Clusters of Related Features
Computing Signature Clusters: an Application of the Command-Line Tools
BV-BRC Command Line Program Reference
Common Options to Command Line Programs
GenomeTypeObject
Hsp
P3DataAPI
P3Utils
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appserv-enumerate-apps
appserv-enumerate-tasks
appserv-kill-task
appserv-query-task
appserv-rerun-task
appserv-start-app
p3-aggregates-to-html
p3-all-contigs
p3-all-drugs
p3-all-genomes
p3-all-subsystem-roles
p3-all-subsystems
p3-all-taxonomies
p3-blast
p3-build-kmer-db
p3-cat
p3-closest-seqs
p3-co-occur
p3-collate
p3-compare-cols
p3-count
p3-count-families
p3-cp
p3-discriminating-kmers
p3-dump-genomes
p3-echo
p3-extract
p3-fasta-md5
p3-feature-gap
p3-feature-upstream
p3-file-filter
p3-find-couples
p3-find-features
p3-find-in-clusters
p3-find-serology-data
p3-find-surveillance-data
p3-format-results
p3-function-parse
p3-function-to-role
p3-generate-close-roles
p3-generate-clusters
p3-genome-distance
p3-genome-fasta
p3-genome-kmer-hits
p3-genome-md5
p3-genus-species
p3-get-drug-genomes
p3-get-family-data
p3-get-family-features
p3-get-feature-data
p3-get-feature-group
p3-get-feature-protein-regions
p3-get-feature-protein-structures
p3-get-feature-regions
p3-get-feature-sequence
p3-get-feature-subsystems
p3-get-features-by-sequence
p3-get-features-in-regions
p3-get-genome-contigs
p3-get-genome-data
p3-get-genome-drugs
p3-get-genome-expression
p3-get-genome-features
p3-get-genome-group
p3-get-genome-protein-regions
p3-get-genome-protein-structures
p3-get-genome-refseq-features
p3-get-genome-sp-genes
p3-get-genome-subsystems
p3-get-subsystem-features
p3-get-subsystem-roles
p3-get-taxonomy-data
p3-gto
p3-gto-dna
p3-gto-fasta
p3-gto-fetch
p3-gto-scan
p3-head
p3-identify-clusters
p3-job-status
p3-join
p3-kmer-compare
p3-less
p3-list-feature-groups
p3-list-genome-groups
p3-login
p3-logout
p3-ls
p3-mass-cluster-run
p3-match
p3-merge
p3-mkdir
p3-nucleon-runs
p3-peg-kmer-hits
p3-pick
p3-pick-by-class
p3-pivot
p3-project-subsystems
p3-put-feature-group
p3-put-genome-group
p3-qstat
p3-rast
p3-related-by-clusters
p3-rep-prots
p3-rm
p3-rmdir
p3-role-fasta
p3-role-features
p3-role-matrix
p3-sequence-profile
p3-set-to-relation
p3-shuffle
p3-signature-clusters
p3-signature-families
p3-signature-peginfo
p3-sort
p3-stats
p3-submit-BLAST
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p3-submit-codon-tree
p3-submit-fastqutils
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p3-submit-genome-annotation
p3-submit-genome-assembly
p3-submit-metagenome-binning
p3-submit-metagenomic-read-mapping
p3-submit-proteome-comparison
p3-submit-rnaseq
p3-submit-sars2-analysis
p3-submit-sars2-assembly
p3-submit-taxonomic-classification
p3-submit-variation-analysis
p3-subsys-roles
p3-tail
p3-tbl-to-fasta
p3-tbl-to-html
p3-tests
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p3-whoami
p3-write-kmers
submit-patric-annotation
submit-patric-genbank
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p3-ls
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p3-ls
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List files.
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