WORKSPACES

All Advanced Searches

Taxa

Search for taxa using taxon id or name and jump to taxon level pages to access relevant data and analysis tools.

Genomes

Search for microbial or viral genomes (or genome segments for segmented viruses) of interest using generic keywords, genome id/name, pathogen group, various metadata attributes, or database identifiers.

Strains

Search for strains of interest for segmented viruses using generic keywords, genome id/name, pathogen group, various metadata attributes, or presence of select segments.

Proteins

Search for proteins of interest (resulting from CDS and mature peptide features) using generic keywords, pathogen group, various genome metadata attributes, protein product, or database identifiers.

Specialty Genes

Search for specialty genes annotated in microbial genomes, such as antimicrobial resistance genes, virulence factors, essential genes, drug targets, and human homologs. Search using generic keywords, pathogen group, property, source database, or protein product.

Domains and Motifs

Search for protein domains and motifs of interest using generic keywords, pathogen group, taxon name, source database, domain id or name.

Epitopes

Search for epitopes of interest using generic keywords, pathogen group or taxon name, epitope id, type, sequence, protein accession or product, or assay results.

Protein Structures

Search for experimentally characterized protein structures of interest using generic keywords, pathogen group or taxon name, PDB id, description, or protein product.

Pathways

Search for metabolic pathways annotated in microbial genomes using generic keywords, pathogen group or taxon name, pathway id, name, product, or EC number.

Subsystems

Search for subsystems annotated in microbial genomes using generic keywords, pathogen group or taxon name, subsystem id, name, or functional role.

Surveillance

Search for surveillance data for select viral families using generic keywords, pathogen test type, test result, host, country, or collection year.

Serology

Search for serology data for select viral families using generic keywords, test type, test result, host, country, or collection year.